Interoperability between Bioinformatics Tools: A Logic Programming Approach

The goal of this project is to develop solutions to enhance interoperability between bioinformatics applications. Most existing applications adopt different data formats, forcing biologists into tedious translation work. We propose to use of Nexus as an intermediate representation language. We develop a complete grammar for Nexus and we adopt this grammar to build a parser. The construction heavily relies on the peculiar features of Prolog, to easily derive effective parsing and translating procedures. We also develop a general parse tree format suitable for interconversion between Nexus and other formats.

• Type: Conference
• Year: 2001
• Where: PADL
• Authors: Juan Raymundo Iglesias, Gopal Gupta, Enrico Pontelli, Desh Ranjan, Brook Milligan
• Keywords: Different Data Formats, Most Existing Applications, PADL 2001, Programming Languages, Tedious Translation Work