In biological sequence processing, Multiple Sequence Alignment (MSA) techniques capture information about long-distance dependencies and the three-dimensional structure of protein and nucleotide sequences without resorting to polynomial complexity context-free models. But MSA techniques have rarely been used in natural language (NL) processing, and never for NL morphology induction. Our MetaMorph algorithm is a first attempt at leveraging MSA techniques to induce NL morphology in an unsupervised fashion. Given a text corpus in any language, MetaMorph sequentially aligns words of the corpus to form an MSA and then segments the MSA to produce morphological analyses. Over corpora that contain millions of unique word types, MetaMorph identifies morphemes at an F1 below state-of-the-art performance. But when restricted to smaller sets of orthographically related words, MetaMorph outperforms the state-of-the-art ParaMor-Morfessor Union morphology induction system. Tested on 5,000 orthographi...