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BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
13 years 6 months ago
Probabilistic topic modeling for genomic data interpretation
Recently, the concept of a species containing both core and distributed genes, known as the supra- or pangenome theory, has been introduced. In this paper, we aim to develop a new ...
Xin Chen, Xiaohua Hu, Xiajiong Shen, Gail Rosen
BMCBI
2008
153views more  BMCBI 2008»
13 years 8 months ago
AWclust: point-and-click software for non-parametric population structure analysis
Background: Population structure analysis is important to genetic association studies and evolutionary investigations. Parametric approaches, e.g. STRUCTURE and L-POP, usually ass...
Xiaoyi Gao, Joshua D. Starmer
CVPR
2012
IEEE
11 years 10 months ago
Bag of textons for image segmentation via soft clustering and convex shift
We propose an unsupervised image segmentation method based on texton similarity and mode seeking. The input image is first convolved with a filter-bank, followed by soft cluster...
Zhiding Yu, Ang Li, Oscar C. Au, Chunjing Xu
BMCBI
2005
112views more  BMCBI 2005»
13 years 7 months ago
"Harshlighting" small blemishes on microarrays
Background: Microscopists are familiar with many blemishes that fluorescence images can have due to dust and debris, glass flaws, uneven distribution of fluids or surface coatings...
Mayte Suárez-Fariñas, Asifa Haider, ...
TMI
1998
140views more  TMI 1998»
13 years 7 months ago
Automated Seeded Lesion Segmentation on Digital Mammograms
Abstract—Segmenting lesions is a vital step in many computerized mass-detection schemes for digital (or digitized) mammograms. We have developed two novel lesion segmentation tec...
Matthew A. Kupinski, Maryellen L. Giger