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JCB
2000
75views more  JCB 2000»
13 years 10 months ago
A Bayesian Model for Detecting Past Recombination Events in DNA Multiple Alignments
Gráinne McGuire, Frank Wright, Michael J. P...
GCB
2000
Springer
137views Biometrics» more  GCB 2000»
14 years 2 months ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright
BMCBI
2006
92views more  BMCBI 2006»
13 years 11 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
BMCBI
2006
115views more  BMCBI 2006»
13 years 11 months ago
Detecting recombination in evolving nucleotide sequences
Background: Genetic recombination can produce heterogeneous phylogenetic histories within a set of homologous genes. These recombination events can be obscured by subsequent resid...
Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan