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» A Boyer-Moore Type Algorithm for Compressed Pattern Matching
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CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
14 years 2 months ago
Compressed Pattern Matching in DNA Sequences
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
Lei Chen, Shiyong Lu, Jeffrey L. Ram
CORR
2008
Springer
128views Education» more  CORR 2008»
13 years 10 months ago
A Fast Generic Sequence Matching Algorithm
A string matching--and more generally, sequence matching--algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of compari...
David R. Musser, Gor V. Nishanov
CPM
2005
Springer
123views Combinatorics» more  CPM 2005»
14 years 3 months ago
A Simple Fast Hybrid Pattern-Matching Algorithm
Abstract. The Knuth-Morris-Pratt (KMP) pattern-matching algorithm guarantees both independence from alphabet size and worst-case execution time linear in the pattern length; on the...
Frantisek Franek, Christopher G. Jennings, William...
DCC
2010
IEEE
14 years 5 months ago
A New Searchable Variable-to-Variable Compressor
Word-based compression over natural language text has shown to be a good choice to trade compression ratio and speed, obtaining compression ratios close to 30% and very fast decom...
Nieves R. Brisaboa, Antonio Fariña, Juan-Ra...
STACS
1992
Springer
14 years 2 months ago
Speeding Up Two String-Matching Algorithms
We show how to speed up two string-matching algorithms: the Boyer-Moore algorithm (BM algorithm), and its version called here the reverse factor algorithm (RF algorithm). The RF al...
Maxime Crochemore, Thierry Lecroq, Artur Czumaj, L...