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TPHOL
1998
IEEE
14 years 1 months ago
Co-inductive Axiomatization of a Synchronous Language
Abstract. Over the last decade, the increasing demand for the validation of safety critical systems lead to the development of domain-specific programming languages (e.g. synchrono...
David Nowak, Jean-René Beauvais, Jean-Pierr...
BMCBI
2010
101views more  BMCBI 2010»
13 years 9 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
BMCBI
2010
122views more  BMCBI 2010»
13 years 9 months ago
An overview of the CellML API and its implementation
Background: CellML is an XML based language for representing mathematical models, in a machine-independent form which is suitable for their exchange between different authors, and...
Andrew K. Miller, Justin Marsh, Adam Reeve, Alan G...
RECOMB
2003
Springer
14 years 9 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
IWNAS
2008
IEEE
14 years 3 months ago
Parallel Job Scheduling with Overhead: A Benchmark Study
We study parallel job scheduling, where each job may be scheduled on any number of available processors in a given parallel system. We propose a mathematical model to estimate a j...
Richard A. Dutton, Weizhen Mao, Jie Chen, William ...