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PSB
2010
13 years 5 months ago
Clustering Context-Specific Gene Regulatory Networks
Archana Ramesh, Robert Trevino, Daniel D. Von Hoff...
GRC
2005
IEEE
14 years 1 months ago
A linear control model for gene intervention in a genetic regulatory network
In this paper, we propose a linear control model for gene intervention in a genetic regulatory network. At each time step, finite controls are allowed to drive the network states...
Shuqin Zhang, Michael K. Ng, Wai-Ki Ching, Tatsuya...
BMCBI
2008
201views more  BMCBI 2008»
13 years 8 months ago
A copula method for modeling directional dependence of genes
Background: Genes interact with each other as basic building blocks of life, forming a complicated network. The relationship between groups of genes with different functions can b...
Jong-Min Kim, Yoon-Sung Jung, Engin A. Sungur, Kap...
BMCBI
2005
130views more  BMCBI 2005»
13 years 7 months ago
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
BMCBI
2006
116views more  BMCBI 2006»
13 years 7 months ago
Optimized mixed Markov models for motif identification
Background: Identifying functional elements, such as transcriptional factor binding sites, is a fundamental step in reconstructing gene regulatory networks and remains a challengi...
Weichun Huang, David M. Umbach, Uwe Ohler, Leping ...