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» A Computational Model for RNA Multiple Structural Alignment.
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NAR
2007
136views more  NAR 2007»
13 years 8 months ago
DBAli tools: mining the protein structure space
The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These tools...
Marc A. Martí-Renom, Ursula Pieper, Mallur ...
BMCBI
2005
100views more  BMCBI 2005»
13 years 8 months ago
Evolutionary models for insertions and deletions in a probabilistic modeling framework
Background: Probabilistic models for sequence comparison (such as hidden Markov models and pair hidden Markov models for proteins and mRNAs, or their context-free grammar counterp...
Elena Rivas
NAACL
2010
13 years 6 months ago
Model Combination for Machine Translation
Machine translation benefits from two types of decoding techniques: consensus decoding over multiple hypotheses under a single model and system combination over hypotheses from di...
John DeNero, Shankar Kumar, Ciprian Chelba, Franz ...
JCC
2008
88views more  JCC 2008»
13 years 9 months ago
A self-organizing algorithm for molecular alignment and pharmacophore development
Abstract: We present a method for simultaneous three-dimensional (3D) structure generation and pharmacophorebased alignment using a self-organizing algorithm called Stochastic Prox...
Deepak Bandyopadhyay, Dimitris K. Agrafiotis
COLING
2010
13 years 3 months ago
Generative Alignment and Semantic Parsing for Learning from Ambiguous Supervision
We present a probabilistic generative model for learning semantic parsers from ambiguous supervision. Our approach learns from natural language sentences paired with world states ...
Joohyun Kim, Raymond J. Mooney