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» A Computational Model of Micro-vascular Growth
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BMCBI
2010
72views more  BMCBI 2010»
13 years 8 months ago
Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials
Background: Knowledge-based potentials have been widely used in the last 20 years for fold recognition, protein structure prediction from amino acid sequence, ligand binding, prot...
Yaping Feng, Andrzej Kloczkowski, Robert L. Jernig...
CLUSTER
2009
IEEE
13 years 6 months ago
Design alternatives for implementing fence synchronization in MPI-2 one-sided communication for InfiniBand clusters
Scientific computing has seen an immense growth in recent years. The Message Passing Interface (MPI) has become the de-facto standard for parallel programming model for distribute...
Gopalakrishnan Santhanaraman, Tejus Gangadharappa,...
BMCBI
2006
121views more  BMCBI 2006»
13 years 8 months ago
Splice site identification using probabilistic parameters and SVM classification
Background: Recent advances and automation in DNA sequencing technology has created a vast amount of DNA sequence data. This increasing growth of sequence data demands better and ...
A. K. M. A. Baten, Bill C. H. Chang, Saman K. Halg...
IJHPCA
2010
117views more  IJHPCA 2010»
13 years 7 months ago
Fine-Grained Multithreading Support for Hybrid Threaded MPI Programming
As high-end computing systems continue to grow in scale, recent advances in multiand many-core architectures have pushed such growth toward more denser architectures, that is, mor...
Pavan Balaji, Darius Buntinas, David Goodell, Will...
IPPS
2009
IEEE
14 years 3 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...