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» A Data Transformation System for Biological Data Sources
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BMCBI
2004
134views more  BMCBI 2004»
15 years 4 months ago
Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE)
Background: An important challenge for transcript counting methods such as Serial Analysis of Gene Expression (SAGE), "Digital Northern" or Massively Parallel Signature ...
Ricardo Z. N. Vêncio, Helena Brentani, Diogo...
DEXAW
2004
IEEE
177views Database» more  DEXAW 2004»
15 years 8 months ago
An Example of the ESTEST Approach to Combining Unstructured Text and Structured Data
In this paper, we demonstrate the use of the ESTEST system, which combines the data integration approach with techniques from Information Extraction in order to allow information ...
Dean Williams, Alexandra Poulovassilis
JLP
2000
102views more  JLP 2000»
15 years 4 months ago
Recursive Query Plans for Data Integration
Generating query-answering plans for data integration systems requires to translate a user query, formulated in terms of a mediated schema, to a query that uses relations that are...
Oliver M. Duschka, Michael R. Genesereth, Alon Y. ...
BMCBI
2008
146views more  BMCBI 2008»
15 years 4 months ago
A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data
Background: The previous studies of genome-wide expression patterns show that a certain percentage of genes are cell cycle regulated. The expression data has been analyzed in a nu...
Chang Sik Kim, Cheol Soo Bae, Hong Joon Tcha
BMCBI
2010
193views more  BMCBI 2010»
15 years 4 months ago
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
Background: Mass spectrometry (MS) coupled with online separation methods is commonly applied for differential and quantitative profiling of biological samples in metabolomic as w...
Tomás Pluskal, Sandra Castillo, Alejandro V...