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» A Database Platform for Bioinformatics
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BIBE
2005
IEEE
107views Bioinformatics» more  BIBE 2005»
14 years 2 months ago
DSIM: A Distance-Based Indexing Method for Genomic Sequences
In this paper, we propose a Distance-based Sequence Indexing Method (DSIM) for indexing and searching genome databases. Borrowing the idea of video compression, we compress the ge...
Xia Cao, Beng Chin Ooi, HweeHwa Pang, Kian-Lee Tan...
DILS
2005
Springer
14 years 2 months ago
Support for BioIndexing in BLASTgres
The ability to perform genome-wide and cross-genome data analyses can dramatically reduce the time required for new biological discoveries. This raises important issues in bioinfor...
Ruey-Lung Hsiao, Douglas Stott Parker Jr., Hung-ch...
ICDE
2008
IEEE
157views Database» more  ICDE 2008»
14 years 10 months ago
Querying and Managing Provenance through User Views in Scientific Workflows
Abstract-- Workflow systems have become increasingly popular for managing experiments where many bioinformatics tasks are chained together. Due to the large amount of data generate...
Olivier Biton, Sarah Cohen Boulakia, Susan B. Davi...
APSEC
2010
IEEE
13 years 23 days ago
Evaluating Cloud Platform Architecture with the CARE Framework
There is an emergence of cloud application platforms such as Microsoft’s Azure, Google’s App Engine and Amazon’s EC2/SimpleDB/S3. Startups and Enterprise alike, lured by the...
Liang Zhao, Anna Liu, Jacky Keung
BMCBI
2010
178views more  BMCBI 2010»
13 years 9 months ago
CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics
Background: Recent studies have shown that copy number variations (CNVs) are frequent in higher eukaryotes and associated with a substantial portion of inherited and acquired risk...
Xiaowu Gai, Juan C. Perin, Kevin Murphy, Ryan O'Ha...