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SIGMOD
2010
ACM
308views Database» more  SIGMOD 2010»
13 years 7 months ago
GBLENDER: towards blending visual query formulation and query processing in graph databases
Given a graph database D and a query graph g, an exact subgraph matching query asks for the set S of graphs in D that contain g as a subgraph. This type of queries find important...
Changjiu Jin, Sourav S. Bhowmick, Xiaokui Xiao, Ja...
SIGMOD
2005
ACM
166views Database» more  SIGMOD 2005»
14 years 9 months ago
Substructure Similarity Search in Graph Databases
Advanced database systems face a great challenge raised by the emergence of massive, complex structural data in bioinformatics, chem-informatics, and many other applications. The ...
Xifeng Yan, Philip S. Yu, Jiawei Han
BMCBI
2011
13 years 22 days ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
AINA
2007
IEEE
14 years 3 months ago
Database-Driven Grid Computing with GridBASE
The GridBASE framework for database-driven grid computing is presented. The design and a prototype implementation of the framework is discussed. Industry-strength database technol...
Hans De Sterck, Chen Zhang, Aleks Papo
BMCBI
2008
121views more  BMCBI 2008»
13 years 9 months ago
iRefIndex: A consolidated protein interaction database with provenance
Background: Interaction data for a given protein may be spread across multiple databases. We set out to create a unifying index that would facilitate searching for these data and ...
Sabry Razick, George Magklaras, Ian M. Donaldson