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BMCBI
2010
189views more  BMCBI 2010»
13 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
IPPS
2008
IEEE
14 years 1 months ago
Parallelized preprocessing algorithms for high-density oligonucleotide arrays
Studies of gene expression using high-density oligonucleotide microarrays have become standard in a variety of biological contexts. The data recorded using the microarray techniqu...
Markus Schmidberger, Ulrich Mansmann
IPPS
2005
IEEE
14 years 1 months ago
A Case Study on Pattern-Based Systems for High Performance Computational Biology
Computational biology research is now faced with the burgeoning number of genome data. The rigorous postprocessing of this data requires an increased role for high performance com...
Weiguo Liu, Bertil Schmidt
DKE
2006
125views more  DKE 2006»
13 years 7 months ago
Online clustering of parallel data streams
In recent years, the management and processing of so-called data streams has become a topic of active research in several fields of computer science such as, e.g., distributed sys...
Jürgen Beringer, Eyke Hüllermeier
KDD
2005
ACM
127views Data Mining» more  KDD 2005»
14 years 27 days ago
Mining closed relational graphs with connectivity constraints
Relational graphs are widely used in modeling large scale networks such as biological networks and social networks. In this kind of graph, connectivity becomes critical in identif...
Xifeng Yan, Xianghong Jasmine Zhou, Jiawei Han