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SDM
2009
SIAM
167views Data Mining» more  SDM 2009»
14 years 4 months ago
Parallel Pairwise Clustering.
Given the pairwise affinity relations associated with a set of data items, the goal of a clustering algorithm is to automatically partition the data into a small number of homogen...
Elad Yom-Tov, Noam Slonim
CLUSTER
2003
IEEE
14 years 20 days ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
PDCAT
2004
Springer
14 years 21 days ago
Parallel Computing Platform for the Agent-Based Modeling of Multicellular Biological Systems
Abstract. Agent-based simulation of large multicellular biological systems has become a viable option owing to affordable parallel computers, such as Beowulf-style clusters. We de...
Toh Da-Jun, Francis Tang, Travis Lee, Deepak Sarda...
IPPS
2002
IEEE
14 years 9 days ago
Portals 3.0: Protocol Building Blocks for Low Overhead Communication
This paper describes the evolution of the Portals message passing architecture and programming interface from its initial development on tightly-coupled massively parallel platfor...
Ron Brightwell, William Lawry, Arthur B. Maccabe, ...
ICPP
2009
IEEE
14 years 2 months ago
Generalizing k-Betweenness Centrality Using Short Paths and a Parallel Multithreaded Implementation
We present a new parallel algorithm that extends and generalizes the traditional graph analysis metric of betweenness centrality to include additional non-shortest paths according...
Karl Jiang, David Ediger, David A. Bader