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BMCBI
2010
139views more  BMCBI 2010»
13 years 7 months ago
A highly efficient multi-core algorithm for clustering extremely large datasets
Background: In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput t...
Johann M. Kraus, Hans A. Kestler
IPPS
2003
IEEE
14 years 19 days ago
GCA: A Massively Parallel Model
We had introduced the massively parallel global cellular automata (GCA) model. Parallel algorithms derived from applications can be mapped straight forward onto this model. In thi...
Rolf Hoffmann, Klaus-Peter Völkmann, Wolfgang...
EUMAS
2006
13 years 8 months ago
A Customizable Multi-Agent System for Distributed Data Mining
We present a general Multi-Agent System framework for distributed data mining based on a Peer-toPeer model. The framework adopts message-based asynchronous communication and a dyn...
Giancarlo Fortino, Giuseppe Di Fatta
TC
2010
13 years 5 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
PPOPP
2012
ACM
12 years 2 months ago
Massively parallel breadth first search using a tree-structured memory model
Analysis of massive graphs has emerged as an important area for massively parallel computation. In this paper, it is shown how the Fresh Breeze trees-of-chunks memory model may be...
Tom St. John, Jack B. Dennis, Guang R. Gao