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BICOB
2009
Springer
14 years 1 months ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...
IPPS
2010
IEEE
13 years 5 months ago
On the parallelisation of MCMC-based image processing
Abstract--The increasing availability of multi-core and multiprocessor architectures provides new opportunities for improving the performance of many computer simulations. Markov C...
Jonathan M. R. Byrd, Stephen A. Jarvis, Abhir H. B...
CLUSTER
2007
IEEE
14 years 1 months ago
Balancing productivity and performance on the cell broadband engine
— The Cell Broadband Engine (BE) is a heterogeneous multicore processor, combining a general-purpose POWER architecture core with eight independent single-instructionmultiple-dat...
Sadaf R. Alam, Jeremy S. Meredith, Jeffrey S. Vett...
APVIS
2011
12 years 7 months ago
Loose capacity-constrained representatives for the qualitative visual analysis in molecular dynamics
Molecular dynamics is a widely used simulation technique to investigate material properties and structural changes under external forces. The availability of more powerful cluster...
Steffen Frey, Thomas Schlömer, Sebastian Grot...
HPDC
2010
IEEE
13 years 8 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker