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ENTCS
2008
95views more  ENTCS 2008»
13 years 7 months ago
Coverage-biased Random Exploration of Models
This paper describes a set of methods for randomly drawing traces in large models either uniformly among all traces, or with a coverage criterion as target. Classical random walk ...
Marie-Claude Gaudel, Alain Denise, Sandrine-Domini...
BMCBI
2010
98views more  BMCBI 2010»
13 years 7 months ago
An optimized TOPS+ comparison method for enhanced TOPS models
nd: Although methods based on highly abstract descriptions of protein structures, such as VAST and TOPS, can perform very fast protein structure comparison, the results can lack a...
Mallika Veeramalai, David Gilbert, Gabriel Valient...
ICDE
2006
IEEE
232views Database» more  ICDE 2006»
14 years 8 months ago
Dual Labeling: Answering Graph Reachability Queries in Constant Time
Graph reachability is fundamental to a wide range of applications, including XML indexing, geographic navigation, Internet routing, ontology queries based on RDF/OWL, etc. Many ap...
Haixun Wang, Hao He, Jeffrey Xu Yu, Jun Yang 0001,...
TIP
2008
133views more  TIP 2008»
13 years 7 months ago
A Recursive Model-Reduction Method for Approximate Inference in Gaussian Markov Random Fields
This paper presents recursive cavity modeling--a principled, tractable approach to approximate, near-optimal inference for large Gauss-Markov random fields. The main idea is to su...
Jason K. Johnson, Alan S. Willsky
BMCBI
2006
120views more  BMCBI 2006»
13 years 7 months ago
Projections for fast protein structure retrieval
Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...