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BMCBI
2008
211views more  BMCBI 2008»
13 years 7 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
ICDM
2010
IEEE
276views Data Mining» more  ICDM 2010»
13 years 5 months ago
Accelerating Dynamic Time Warping Subsequence Search with GPUs and FPGAs
Many time series data mining problems require subsequence similarity search as a subroutine. While this can be performed with any distance measure, and dozens of distance measures ...
Doruk Sart, Abdullah Mueen, Walid A. Najjar, Eamon...
SCALESPACE
2007
Springer
14 years 1 months ago
Non-negative Sparse Modeling of Textures
This paper presents a statistical model for textures that uses a non-negative decomposition on a set of local atoms learned from an exemplar. This model is described by the varianc...
Gabriel Peyré
BMCBI
2006
137views more  BMCBI 2006»
13 years 7 months ago
Chaos game representation for comparison of whole genomes
Background: Chaos game representation of genome sequences has been used for visual representation of genome sequence patterns as well as alignment-free comparisons of sequences ba...
Jijoy Joseph, Roschen Sasikumar
IPPS
2010
IEEE
13 years 5 months ago
Improving numerical reproducibility and stability in large-scale numerical simulations on GPUs
The advent of general purpose graphics processing units (GPGPU's) brings about a whole new platform for running numerically intensive applications at high speeds. Their multi-...
Michela Taufer, Omar Padron, Philip Saponaro, Sand...