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RECOMB
2005
Springer
14 years 7 months ago
Stability of Rearrangement Measures in the Comparison of Genome Sequences
We present data-analytic and statistical tools for studying rates of rearrangement of whole genomes and to assess the stability of these methods with changes in the level of resol...
David Sankoff, Matthew Mazowita
BMCBI
2008
139views more  BMCBI 2008»
13 years 7 months ago
A topological transformation in evolutionary tree search methods based on maximum likelihood combining p-ECR and neighbor joinin
Background: Inference of evolutionary trees using the maximum likelihood principle is NP-hard. Therefore, all practical methods rely on heuristics. The topological transformations...
Maozu Guo, Jian-Fu Li, Yang Liu
FLAIRS
2004
13 years 9 months ago
Multimodal Function Optimization Using Local Ruggedness Information
In multimodal function optimization, niching techniques create diversification within the population, thus encouraging heterogeneous convergence. The key to the effective diversif...
Jian Zhang 0007, Xiaohui Yuan, Bill P. Buckles
BMCBI
2006
120views more  BMCBI 2006»
13 years 7 months ago
An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse
Background: Many statistical algorithms combine microarray expression data and genome sequence data to identify transcription factor binding motifs in the low eukaryotic genomes. ...
Ryung S. Kim, Hongkai Ji, Wing Hung Wong
TCBB
2011
13 years 2 months ago
Comparison of Galled Trees
Galled trees, directed acyclic graphs that model evolutionary histories with isolated hybridization events, have become very popular due to both their biological significance and ...
Gabriel Cardona, Mercè Llabrés, Fran...