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    » A Framework for Improving Protein Structure Predictions by T...
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    CIBCB
    2009
    IEEE
    172views Computational Biology» more  CIBCB 2009»
    Improved prediction of trans-membrane spans in proteins using an artificial neural network
    13 years 8 months ago
    Improved prediction of trans-membrane spans in proteins using an artificial neural network
    Download  www.meilerlab.org
    Tools for the identification of trans-membrane spans from the protein sequence are widely used in the experimental community. Computational structural biology seeks to increase the...
    Julia Koehler, Ralf Mueller, Jens Meiler
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    JBCB
    2010
    138views more  JBCB 2010»
    Hierarchical Classification of Gene Ontology Terms Using the Gostruct Method
    13 years 2 months ago
    Hierarchical Classification of Gene Ontology Terms Using the Gostruct Method
    Download  www.cs.colostate.edu
    Protein function prediction is an active area of research in bioinformatics. And yet, transfer of annotation on the basis of sequence or structural similarity remains widely used ...
    Artem Sokolov, Asa Ben-Hur
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    DMKD
    2003
    ACM
    110views Data Mining» more  DMKD 2003»
    Weave amino acid sequences for protein secondary structure prediction
    14 years 22 days ago
    Weave amino acid sequences for protein secondary structure prediction
    Download  elvis.slis.indiana.edu
    Given a known protein sequence, predicting its secondary structure can help understand its three-dimensional (tertiary) structure, i.e., the folding. In this paper, we present an ...
    Xiaochun Yang, Bin Wang
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    NIPS
    2008
    144views Information Technology» more  NIPS 2008»
    Predicting the Geometry of Metal Binding Sites from Protein Sequence
    13 years 9 months ago
    Predicting the Geometry of Metal Binding Sites from Protein Sequence
    Download  disi.unitn.it
    Metal binding is important for the structural and functional characterization of proteins. Previous prediction efforts have only focused on bonding state, i.e. deciding which prot...
    Paolo Frasconi, Andrea Passerini
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    NIPS
    2007
    121views Information Technology» more  NIPS 2007»
    Feature Selection Methods for Improving Protein Structure Prediction with Rosetta
    13 years 9 months ago
    Feature Selection Methods for Improving Protein Structure Prediction with Rosetta
    Download  books.nips.cc
    Rosetta is one of the leading algorithms for protein structure prediction today. It is a Monte Carlo energy minimization method requiring many random restarts to find structures ...
    Ben Blum, Michael I. Jordan, David Kim, Rhiju Das,...
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