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» A Gene Network Model for Developing Cell Lineages
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TPDS
2008
124views more  TPDS 2008»
13 years 7 months ago
Efficient Breadth-First Search on the Cell/BE Processor
Multicore processors are an architectural paradigm shift that promises a dramatic increase in performance. But, they also bring an unprecedented level of complexity in algorithmic ...
Daniele Paolo Scarpazza, Oreste Villa, Fabrizio Pe...
GI
2009
Springer
14 years 7 days ago
Massively-Parallel Simulation of Biochemical Systems
: Understanding biological evolution prompts for a detailed understanding of the realized phenotype. Biochemical and gene regulatory dynamics are a cornerstone for the physiology o...
Jens Ackermann, Paul Baecher, Thorsten Franzel, Mi...
BMCBI
2004
146views more  BMCBI 2004»
13 years 7 months ago
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
Background: Functional genomics studies are yielding information about regulatory processes in the cell at an unprecedented scale. In the yeast S. cerevisiae, DNA microarrays have...
Feng Gao, Barrett C. Foat, Harmen J. Bussemaker
CAV
2011
Springer
217views Hardware» more  CAV 2011»
12 years 11 months ago
From Cardiac Cells to Genetic Regulatory Networks
Abstract. A fundamental question in the treatment of cardiac disorders, such as tachycardia and fibrillation, is under what circumstances does such a disorder arise? To answer to ...
Radu Grosu, Grégory Batt, Flavio H. Fenton,...
BMCBI
2005
169views more  BMCBI 2005»
13 years 7 months ago
Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthe
Background: Synthetic lethality experiments identify pairs of genes with complementary function. More direct functional associations (for example greater probability of membership...
Yan Qi 0003, Ping Ye, Joel S. Bader