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» A Generalization of Automatic Sequences
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BMCBI
2006
134views more  BMCBI 2006»
13 years 9 months ago
A statistical score for assessing the quality of multiple sequence alignments
Background: Multiple sequence alignment is the foundation of many important applications in bioinformatics that aim at detecting functionally important regions, predicting protein...
Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa ...
BMCBI
2008
149views more  BMCBI 2008»
13 years 9 months ago
Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
Olivier Bastien, Eric Maréchal
BMCBI
2008
172views more  BMCBI 2008»
13 years 9 months ago
Compo: composite motif discovery using discrete models
Background: Computational discovery of motifs in biomolecular sequences is an established field, with applications both in the discovery of functional sites in proteins and regula...
Geir Kjetil Sandve, Osman Abul, Finn Drablø...
COLING
2010
13 years 4 months ago
Multiword Expressions in the wild? The mwetoolkit comes in handy
The mwetoolkit is a tool for automatic extraction of Multiword Expressions (MWEs) from monolingual corpora. It both generates and validates MWE candidates. The generation is based...
Carlos Ramisch, Aline Villavicencio, Christian Boi...
BMCBI
2011
13 years 4 months ago
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown
Background: Methods of determining whether or not any particular HIV-1 sequence stems - completely or in part - from some unknown HIV-1 subtype are important for the design of vac...
Thomas Unterthiner, Anne-Kathrin Schultz, Jan Bull...