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» A Generalization of Automatic Sequences
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BMCBI
2006
122views more  BMCBI 2006»
13 years 9 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...
WABI
2007
Springer
123views Bioinformatics» more  WABI 2007»
14 years 3 months ago
Inverse Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...
Eagu Kim, John D. Kececioglu
PAKDD
2001
ACM
148views Data Mining» more  PAKDD 2001»
14 years 1 months ago
Scalable Hierarchical Clustering Method for Sequences of Categorical Values
Data clustering methods have many applications in the area of data mining. Traditional clustering algorithms deal with quantitative or categorical data points. However, there exist...
Tadeusz Morzy, Marek Wojciechowski, Maciej Zakrzew...
GECCO
2006
Springer
171views Optimization» more  GECCO 2006»
14 years 20 days ago
A hybrid genetic search for multiple sequence alignment
This paper proposes a hybrid genetic algorithm for multiple sequence alignment. The algorithm evolves guide sequences and aligns input sequences based on the guide sequences. It a...
Seung-Hyun Moon, Sung-Soon Choi, Byung Ro Moon
ICALP
1992
Springer
14 years 1 months ago
Fast Integer Merging on the EREW PRAM
Abstract. We investigate the complexity of merging sequences of small integers on the EREW PRAM. Our most surprising result is that two sorted sequences of n bits each can be merge...
Torben Hagerup