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» A Generalization of Automatic Sequences
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BMCBI
2008
128views more  BMCBI 2008»
13 years 9 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
CSDA
2007
116views more  CSDA 2007»
13 years 9 months ago
Exploring the state sequence space for hidden Markov and semi-Markov chains
The knowledge of the state sequences that explain a given observed sequence for a known hidden Markovian model is the basis of various methods that may be divided into three categ...
Yann Guédon
BMCBI
2011
13 years 19 days ago
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Background: With next-generation sequencing technologies, experiments that were considered prohibitive only a few years ago are now possible. However, while these technologies hav...
Osvaldo Zagordi, Arnab Bhattacharya, Nicholas Erik...
ALMOB
2006
110views more  ALMOB 2006»
13 years 9 months ago
Computing distribution of scale independent motifs in biological sequences
The use of Chaos Game Representation (CGR) or its generalization, Universal Sequence Maps (USM), to describe the distribution of biological sequences has been found objectionable ...
Jonas S. Almeida, Susana Vinga
MOC
2002
72views more  MOC 2002»
13 years 8 months ago
Long-term stability of variable stepsize approximations of semigroups
This paper is concerned with the stability of rational one-step approximations of C0 semigroups. Particular emphasis is laid on long-term stability bounds. The analysis is based on...
Nikolai Bakaev, Alexander Ostermann