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» A Generalization of Automatic Sequences
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DILS
2006
Springer
14 years 2 months ago
An Extensible Light-Weight XML-Based Monitoring System for Sequence Databases
Life science researchers want biological information in their interest to become available to them as soon as possible. A monitoring system is a solution that relieves biologists f...
Dieter Van de Craen, Frank Neven, Kerstin Koch
BMCBI
2008
137views more  BMCBI 2008»
13 years 10 months ago
Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data
Background: Non-sequence gene data (images, literature, etc.) can be found in many different public databases. Access to these data is mostly by text based methods using gene name...
Michael J. Gilchrist, Mikkel B. Christensen, Richa...
ATAL
2005
Springer
14 years 3 months ago
Rapid on-line temporal sequence prediction by an adaptive agent
Robust sequence prediction is an essential component of an intelligent agent acting in a dynamic world. We consider the case of near-future event prediction by an online learning ...
Steven Jensen, Daniel Boley, Maria L. Gini, Paul R...
BMCBI
2010
111views more  BMCBI 2010»
13 years 10 months ago
Protein sequences classification by means of feature extraction with substitution matrices
Background: This paper deals with the preprocessing of protein sequences for supervised classification. Motif extraction is one way to address that task. It has been largely used ...
Rabie Saidi, Mondher Maddouri, Engelbert Mephu Ngu...
CORR
2008
Springer
128views Education» more  CORR 2008»
13 years 10 months ago
A Fast Generic Sequence Matching Algorithm
A string matching--and more generally, sequence matching--algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of compari...
David R. Musser, Gor V. Nishanov