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» A Generalization of Automatic Sequences
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BMCBI
2005
130views more  BMCBI 2005»
13 years 10 months ago
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
MOC
2000
70views more  MOC 2000»
13 years 10 months ago
Extrapolation methods and derivatives of limits of sequences
Let {Sm} be an infinite sequence whose limit or antilimit S can be approximated very efficiently by applying a suitable extrapolation method E0 to {Sm}. Assume that the Sm and henc...
Avram Sidi
IDA
1998
Springer
13 years 10 months ago
Self-Organized-Expert Modular Network for Classification of Spatiotemporal Sequences
We investigate a form of modular neural network for classification with (a) pre-separated input vectors entering its specialist (expert) networks, (b) specialist networks which ar...
Sylvian R. Ray, William H. Hsu
BMCBI
2005
106views more  BMCBI 2005»
13 years 10 months ago
SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution
Background: General protein evolution models help determine the baseline expectations for the evolution of sequences, and they have been extensively useful in sequence analysis an...
Andy Pang, Andrew D. Smith, Paulo A. S. Nuin, Elis...
JCB
1998
92views more  JCB 1998»
13 years 10 months ago
Homology Detection via Family Pairwise Search
The function of an unknown biological sequence can often be accurately inferred by identifying sequences homologous to the original sequence. Given a query set of known homologs, ...
William Noble Grundy