This paper proposes a set of affine invariant features (AIFs) for sequence data. The proposed AIFs can be calculated directly from the sequence data, and their invariance to af...
We study the problem of computing zigzag persistence of a sequence of homology groups and study a particular sequence derived from the levelsets of a real-valued function on a top...
Abstract— We propose a new method for collecting information on regulatory elements found by any motif discovery program. We suggest that combining the results of n leave-oneout ...
Abstract. The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: ...
Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz ...
In this paper, we describe a broad class of problems arising in the context of designing codes for DNA computing. We primarily focus on design considerations pertaining to the phen...