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» A Generalization of Automatic Sequences
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BMCBI
2010
109views more  BMCBI 2010»
15 years 4 months ago
Predicting gene function using hierarchical multi-label decision tree ensembles
Background: S. cerevisiae, A. thaliana and M. musculus are well-studied organisms in biology and the sequencing of their genomes was completed many years ago. It is still a challe...
Leander Schietgat, Celine Vens, Jan Struyf, Hendri...
BMCBI
2006
112views more  BMCBI 2006»
15 years 4 months ago
GENOMEMASKER package for designing unique genomic PCR primers
Background: The design of oligonucleotides and PCR primers for studying large genomes is complicated by the redundancy of sequences. The eukaryotic genomes are particularly diffic...
Reidar Andreson, Eric Reppo, Lauris Kaplinski, Mai...
KDD
2004
ACM
144views Data Mining» more  KDD 2004»
16 years 5 months ago
IncSpan: incremental mining of sequential patterns in large database
Many real life sequence databases, such as customer shopping sequences, medical treatment sequences, etc., grow incrementally. It is undesirable to mine sequential patterns from s...
Hong Cheng, Xifeng Yan, Jiawei Han
SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
16 years 4 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
123
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DCC
2004
IEEE
16 years 4 months ago
Discrete Universal Filtering Through Incremental Parsing
In the discrete filtering problem, a data sequence over a finite alphabet is assumed to be corrupted by a discrete memoryless channel. The goal is to reconstruct the clean sequenc...
Erik Ordentlich, Tsachy Weissman, Marcelo J. Weinb...