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BMCBI
2011
13 years 2 months ago
AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm
Background: Cross-platform analysis of gene express data requires multiple, intricate processes at different layers with various platforms. However, existing tools handle only a s...
Jihoon Kim, Kiltesh Patel, Hyunchul Jung, Winston ...
BMCBI
2010
158views more  BMCBI 2010»
13 years 7 months ago
Validation of differential gene expression algorithms: Application comparing fold-change estimation to hypothesis testing
Background: Sustained research on the problem of determining which genes are differentially expressed on the basis of microarray data has yielded a plethora of statistical algorit...
Corey M. Yanofsky, David R. Bickel
CBMS
2006
IEEE
13 years 9 months ago
Incorporating Gene Ontology in Clustering Gene Expression Data
In this paper we consider a general framework for clustering expression data that permits integration of various biological data sources through combination of corresponding dissi...
Rafal Kustra, Adam Zagdanski
BMCBI
2006
100views more  BMCBI 2006»
13 years 7 months ago
Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas
Background: Expression microarrays represent a powerful technique for the simultaneous investigation of thousands of genes. The evidence that genes are not randomly distributed in...
Federico E. Turkheimer, Federico Roncaroli, Benoit...
BMCBI
2005
148views more  BMCBI 2005»
13 years 7 months ago
Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments
Background: Numerous nonparametric approaches have been proposed in literature to detect differential gene expression in the setting of two user-defined groups. However, there is ...
Xin Gao, Peter X. K. Song