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» A Greedy Algorithm for Aligning DNA Sequences
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IPPS
2008
IEEE
14 years 1 months ago
Ordered index seed algorithm for intensive DNA sequence comparison
This paper presents a seed-based algorithm for intensive DNA sequence comparison. The novelty comes from the way seeds are used to efficiently generate small ungapped alignments ...
Dominique Lavenier
IPPS
2007
IEEE
14 years 1 months ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
JCB
2007
107views more  JCB 2007»
13 years 7 months ago
Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics
Long-range correlations in genomic base composition are a ubiquitous statistical feature among many eukaryotic genomes. In this article, these correlations are shown to substantia...
Philipp W. Messer, Ralf Bundschuh, Martin Vingron,...
CORR
2010
Springer
127views Education» more  CORR 2010»
13 years 6 months ago
Channels Reallocation In Cognitive Radio Networks Based On DNA Sequence Alignment
Nowadays, It has been shown that spectrum scarcity increased due to tremendous growth of new players in wireless base system by the evolution of the radio communication. Resent su...
Santosh Kumar Singh, Krishna Chandra Roy, Vibhakar...
ISMB
1996
13 years 8 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal