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» A Language for Biochemical Systems
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POPL
2012
ACM
12 years 4 months ago
Access permission contracts for scripting languages
The ideal software contract fully specifies the behavior of an operation. Often, in particular in the context of scripting languages, a full specification may be cumbersome to s...
Phillip Heidegger, Annette Bieniusa, Peter Thieman...
BMCBI
2006
103views more  BMCBI 2006»
13 years 8 months ago
Meta-All: a system for managing metabolic pathway information
Background: Many attempts are being made to understand biological subjects at a systems level. A major resource for these approaches are biological databases, storing manifold inf...
Stephan Weise, Ivo Grosse, Christian Klukas, Dirk ...
BMCBI
2008
127views more  BMCBI 2008»
13 years 8 months ago
AMMO-Prot: amine system project 3D-model finder
Background: Amines are biogenic amino acid derivatives, which play pleiotropic and very important yet complex roles in animal physiology. For many other relevant biomolecules, bio...
Ismael Navas Delgado, Raúl Montañez,...
GCB
2004
Springer
101views Biometrics» more  GCB 2004»
14 years 2 months ago
Kleene's Theorem and the Solution of Metabolic Carbon Labeling Systems
: Carbon Labeling Systems (CLS) are large equation systems that describe the dynamics of labeled carbon atoms in a metabolic network. The rapid solution of these systems is the alg...
Nicole Isermann, Michael Weitzel, Wolfgang Wiecher...
BMCBI
2008
152views more  BMCBI 2008»
13 years 8 months ago
Predicting biological system objectives de novo from internal state measurements
Background: Optimization theory has been applied to complex biological systems to interrogate network properties and develop and refine metabolic engineering strategies. For examp...
Erwin P. Gianchandani, Matthew A. Oberhardt, Antho...