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BIOSYSTEMS
2008
130views more  BIOSYSTEMS 2008»
13 years 8 months ago
Biological networks in metabolic P systems
The metabolic P algorithm is a procedure which determines, in a biochemically realistic way, the evolution of P systems representing biological phenomena. A new formulation of thi...
Vincenzo Manca, Luca Bianco
DNA
2007
Springer
127views Bioinformatics» more  DNA 2007»
14 years 2 months ago
Discrete Simulations of Biochemical Dynamics
Abstract. Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics are computed by metabolic algor...
Vincenzo Manca
BIOCOMP
2010
13 years 6 months ago
A Model Reduction Technique for Stochastic Biochemical Kinetics
Abstract-- Modeling the intermolecular reactions in a single cell is a critical problem in computational biology. Biochemical reaction systems often involve species in both low and...
Silvana Ilie, Ekaterina Kudashkina
CSB
2005
IEEE
163views Bioinformatics» more  CSB 2005»
14 years 2 months ago
A symbolic approach to the simulation of biochemical models: application to circadian rhythms
Symbolic rewriting systems are gaining interest as tools for simulating biochemical dynamics. Compared to traditional methods based on differential equations, the symbolic approac...
Federico Fontana, Luca Bianco, Vincenzo Manca
CDC
2008
IEEE
125views Control Systems» more  CDC 2008»
14 years 3 months ago
Dynamical structure analysis of sparsity and minimality heuristics for reconstruction of biochemical networks
— Network reconstruction, i.e. obtaining network structure from input-output information, is a central theme in systems biology. A variety of approaches aim to obtaining structur...
Russell Howes, Lee John Eccleston, Jorge M. Goncal...