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» A Linear Size Index for Approximate Pattern Matching
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VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 7 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
CORR
2010
Springer
138views Education» more  CORR 2010»
13 years 7 months ago
On building minimal automaton for subset matching queries
We address the problem of building an index for a set D of n strings, where each string location is a subset of some finite integer alphabet of size , so that we can answer effici...
Kimmo Fredriksson
DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
14 years 21 days ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
ICCV
2011
IEEE
12 years 9 months ago
Fast Template Matching in Non-Linear Tone-Mapped Images
We propose a fast pattern matching scheme termed Matching by Tone Mapping (MTM) which allows matching under non-linear tone mappings. We show that, when tone mapping is approximate...
Yacov Hel-Or, Hagit Hel-Or and Eyal David
WALCOM
2007
IEEE
109views Algorithms» more  WALCOM 2007»
13 years 8 months ago
Pattern Matching in Degenerate DNA/RNA Sequences
In this paper, we consider the pattern matching problem in DNA and RNA sequences where either the pattern or the text can be degenerate i.e. contain sets of characters. We present ...
M. Sohel Rahman, Costas S. Iliopoulos, Laurent Mou...