Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
We address the problem of building an index for a set D of n strings, where each string location is a subset of some finite integer alphabet of size , so that we can answer effici...
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
We propose a fast pattern matching scheme termed Matching by Tone Mapping (MTM) which allows matching under non-linear tone mappings. We show that, when tone mapping is approximate...
In this paper, we consider the pattern matching problem in DNA and RNA sequences where either the pattern or the text can be degenerate i.e. contain sets of characters. We present ...
M. Sohel Rahman, Costas S. Iliopoulos, Laurent Mou...