HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Over the last decade, Message Passing Interface (MPI) has become a very successful parallel programming environment for distributed memory architectures such as clusters. However, ...
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
Abstract. Performance of the on-chip cache is critical for processor. The multithread program model usually employed by on-chip many-core architectures may have effects on cache ac...