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» A Mechanization of Phylogenetic Trees
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NAR
2007
109views more  NAR 2007»
13 years 10 months ago
GeneTrees: a phylogenomics resource for prokaryotes
The GeneTrees phylogenomics system pursues comparative genomic analyses from the perspective of gene phylogenies for individual genes. The GeneTrees project has the goal of provid...
Yuying Tian, Allan W. Dickerman
APPML
2002
76views more  APPML 2002»
13 years 10 months ago
Proper gromov transforms of metrics are metrics
In phylogenetic analysis, a standard problem is to approximate a given metric by an additive metric. Here it is shown that, given a metric D defined on some finite set X and a non...
Andreas W. M. Dress
JAIR
2008
94views more  JAIR 2008»
13 years 10 months ago
The Ultrametric Constraint and its Application to Phylogenetics
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phyl...
Neil C. A. Moore, Patrick Prosser
BIOINFORMATICS
2008
106views more  BIOINFORMATICS 2008»
13 years 11 months ago
Interactive visualization software for exploring phylogenetic trees and clades
The Summary Tree Explorer (STE) is a Java application for interactively exploring sets of phylogenetic trees using two coupled representations: a node-and-link diagram and a textu...
Mark Derthick
ALGORITHMICA
1999
87views more  ALGORITHMICA 1999»
13 years 10 months ago
The Performance of Neighbor-Joining Methods of Phylogenetic Reconstruction
We analyze the performance of the popular class of neighbor-joining methods of phylogeny reconstruction. In particular, we find conditions under which these methods will determine ...
Kevin Atteson