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» A Mechanization of Phylogenetic Trees
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ACIIDS
2010
IEEE
153views Database» more  ACIIDS 2010»
13 years 12 months ago
Visualization of Influenza Protein Segment HA in Manifold Space
Due to the lateral gene transfer, the phylogenetic tree may be inadequate for representing the evolution of Influenza A (H1N1) virus. This work employs the distance invariant manif...
Cheng-Yuan Liou, Wei-Chen Cheng
COMBINATORICS
2006
102views more  COMBINATORICS 2006»
13 years 10 months ago
Identifying X-Trees with Few Characters
Previous work has shown the perhaps surprising result that, for any binary phylogenetic tree T , there is a set of four characters that define T . Here we deal with the general ca...
Magnus Bordewich, Charles Semple, Mike A. Steel
BMCBI
2011
13 years 2 months ago
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus ge
Background: Results of phylogenetic analysis are often visualized as phylogenetic trees. Such a tree can typically only include up to a few hundred sequences. When more than a few...
Jiajie Zhang, Amir Madany Mamlouk, Thomas Martinet...
EOR
2006
110views more  EOR 2006»
13 years 10 months ago
Scatter search with path relinking for phylogenetic inference
We propose the use of scatter search with path relinking for the inference of phylogenetic trees. Solutions are here represented as trees whose leaves span the set of species unde...
Carlos Cotta
IPPS
2009
IEEE
14 years 5 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...