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» A Mechanization of Phylogenetic Trees
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BMCBI
2005
97views more  BMCBI 2005»
13 years 10 months ago
Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
Background: As genomes evolve after speciation, gene content, coding sequence, gene expression, and splicing all diverge with time from ancestors with close relatives. A minimum e...
Roald Rossnes, Ingvar Eidhammer, David A. Liberles
JBI
2006
13 years 10 months ago
Support versus corroboration
Numerous metrics have been developed that attempt to assess the reliability of phylogenetic trees. Several of these commonly used measures of tree and tree branch support are desc...
Mary G. Egan
IPPS
2006
IEEE
14 years 4 months ago
Parallel multiple sequence alignment with local phylogeny search by simulated annealing
The problem of multiple sequence alignment is one of the most important problems in computational biology. In this paper we present a new method that simultaneously performs multi...
Jaroslaw Zola, Denis Trystram, Andrei Tchernykh, C...
JCB
2006
67views more  JCB 2006»
13 years 10 months ago
The Identifiability of Tree Topology for Phylogenetic Models, Including Covarion and Mixture Models
For a model of molecular evolution to be useful for phylogenetic inference, the topology of evolutionary trees must be identifiable. That is, from a joint distribution the model p...
Elizabeth S. Allman, John A. Rhodes