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» A Mechanization of Phylogenetic Trees
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BICOB
2009
Springer
14 years 5 months ago
A Fitness Distance Correlation Measure for Evolutionary Trees
Phylogenetics is concerned with inferring the genealogical relationships between a group of organisms (or taxa), and this relationship is usually expressed as an evolutionary tree....
Hyun Jung Park, Tiffani L. Williams
BMCBI
2010
142views more  BMCBI 2010»
13 years 11 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
CORR
2007
Springer
76views Education» more  CORR 2007»
13 years 10 months ago
Tripartitions do not always discriminate phylogenetic networks
Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization, or later...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BIOINFORMATICS
2006
111views more  BIOINFORMATICS 2006»
13 years 10 months ago
Multiple Alignment of protein structures and sequences for VMD
Multiple Alignment is a new interface for performing and analyzing multiple protein structure alignments. It enables viewing levels of sequence and structure similarity on the ali...
John Eargle, Dan Wright, Zaida Luthey-Schulten
GECCO
2005
Springer
150views Optimization» more  GECCO 2005»
14 years 4 months ago
A GA for maximum likelihood phylogenetic inference using neighbour-joining as a genotype to phenotype mapping
Evolutionary relationships among species can be represented by a phylogenetic tree and inferred by optimising some measure of fitness, such as the statistical likelihood of the t...
Leon Poladian