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EMNLP
2007
13 years 9 months ago
A Probabilistic Approach to Diachronic Phonology
We present a probabilistic model of diachronic phonology in which individual word forms undergo stochastic edits along the branches of a phylogenetic tree. Our approach allows us ...
Alexandre Bouchard-Côté, Percy Liang,...
NIPS
2007
13 years 9 months ago
A Probabilistic Approach to Language Change
We present a probabilistic approach to language change in which word forms are represented by phoneme sequences that undergo stochastic edits along the branches of a phylogenetic ...
Alexandre Bouchard-Côté, Percy Liang,...
BMCBI
2011
13 years 2 months ago
Tree Pruner: An efficient tool for selecting data from a biased genetic database
Background: Large databases of genetic data are often biased in their representation. Thus, selection of genetic data with desired properties, such as evolutionary representation ...
Mohan Krishnamoorthy, Pragneshkumar Patel, Mira Di...
BMCBI
2010
108views more  BMCBI 2010»
13 years 7 months ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...
JCB
2000
101views more  JCB 2000»
13 years 7 months ago
Evaluation Measures of Multiple Sequence Alignments
Multiple sequence alignments (MSAs) are frequently used in the study of families of protein sequences or DNA/RNA sequences. They are a fundamental tool for the understanding of th...
Gaston H. Gonnet, Chantal Korostensky, Steven A. B...