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» A Multi-Stack Based Phylogenetic Tree Building Method
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CCECE
2006
IEEE
14 years 2 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...
BMCBI
2006
92views more  BMCBI 2006»
13 years 8 months ago
Recrafting the neighbor-joining method
Background: The neighbor-joining method by Saitou and Nei is a widely used method for constructing phylogenetic trees. The formulation of the method gives rise to a canonical (n3)...
Thomas Mailund, Gerth Stølting Brodal, Rolf...
JCB
2006
124views more  JCB 2006»
13 years 8 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
RECOMB
2005
Springer
14 years 9 months ago
Constructing a Smallest Refining Galled Phylogenetic Network
Reticulation events occur frequently in many types of species. Therefore, to develop accurate methods for reconstructing phylogenetic networks in order to describe evolutionary his...
Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguy...
AUSAI
2007
Springer
14 years 17 days ago
Building Classification Models from Microarray Data with Tree-Based Classification Algorithms
Building classification models plays an important role in DNA mircroarray data analyses. An essential feature of DNA microarray data sets is that the number of input variables (gen...
Peter J. Tan, David L. Dowe, Trevor I. Dix