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» A New Approach to Protein Structure Mining and Alignment
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BMCBI
2010
150views more  BMCBI 2010»
13 years 6 months ago
Evolutionary rates at codon sites may be used to align sequences and infer protein domain function
Background: Sequence alignments form part of many investigations in molecular biology, including the determination of phylogenetic relationships, the prediction of protein structu...
Pierre M. Durand, Scott Hazelhurst, Theresa L. Coe...
BMCBI
2010
86views more  BMCBI 2010»
13 years 6 months ago
Mining protein loops using a structural alphabet and statistical exceptionality
Background: Protein loops encompass 50% of protein residues in available three-dimensional structures. These regions are often involved in protein functions, e.g. binding site, ca...
Leslie Regad, Juliette Martin, Grégory Nuel...
PAKDD
2001
ACM
157views Data Mining» more  PAKDD 2001»
13 years 11 months ago
Applying Pattern Mining to Web Information Extraction
Information extraction (IE) from semi-structured Web documents is a critical issue for information integration systems on the Internet. Previous work in wrapper induction aim to so...
Chia-Hui Chang, Shao-Chen Lui, Yen-Chin Wu
RECOMB
2012
Springer
11 years 9 months ago
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising
We develop a novel and general approach to estimating the accuracy of protein multiple sequence alignments without knowledge of a reference alignment, and use our approach to addre...
Dan F. DeBlasio, Travis J. Wheeler, John D. Kececi...
CAIP
2009
Springer
155views Image Analysis» more  CAIP 2009»
14 years 1 months ago
Algorithms for the Sample Mean of Graphs
Measures of central tendency for graphs are important for protoype construction, frequent substructure mining, and multiple alignment of protein structures. This contribution propo...
Brijnesh J. Jain, Klaus Obermayer