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» A New Approach to Protein Structure Mining and Alignment
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BMCBI
2004
108views more  BMCBI 2004»
13 years 8 months ago
Enhanced protein domain discovery using taxonomy
Background: It is well known that different species have different protein domain repertoires, and indeed that some protein domains are kingdom specific. This information has not ...
Lachlan James M. Coin, Alex Bateman, Richard Durbi...
ADC
2008
Springer
110views Database» more  ADC 2008»
14 years 2 months ago
Graph Mining based on a Data Partitioning Approach
Existing graph mining algorithms typically assume that the dataset can fit into main memory. As many large graph datasets cannot satisfy this condition, truly scalable graph minin...
Son N. Nguyen, Maria E. Orlowska, Xue Li
BMCBI
2008
112views more  BMCBI 2008»
13 years 8 months ago
A simplified approach to disulfide connectivity prediction from protein sequences
Background: Prediction of disulfide bridges from protein sequences is useful for characterizing structural and functional properties of proteins. Several methods based on differen...
Marc Vincent, Andrea Passerini, Matthieu Labb&eacu...
PKDD
2007
Springer
76views Data Mining» more  PKDD 2007»
14 years 2 months ago
Finding Transport Proteins in a General Protein Database
The number of specialized databases in molecular biology is growing fast, as is the availability of molecular data. These trends necessitate the development of automatic methods fo...
Sanmay Das, Milton H. Saier Jr., Charles Elkan
BIBE
2005
IEEE
14 years 2 months ago
Improved Phylogenetic Motif Detection Using Parsimony
We have recently demonstrated (La et al, Proteins, 58:2005) that sequence fragments approximating the overall familial phylogeny, called phylogenetic motifs (PMs), represent a pro...
Usman Roshan, Dennis R. Livesay, David La