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» A New Approach to Protein Structure Mining and Alignment
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BMCBI
2008
78views more  BMCBI 2008»
13 years 6 months ago
A new protein linear motif benchmark for multiple sequence alignment software
Background: Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational ...
Emmanuel Perrodou, Claudia Chica, Olivier Poch, To...
BIOCOMP
2008
13 years 8 months ago
GIPSCo: A Method for Comparison of Protein Structures Based on Geometric Invariants
Protein structure comparison is important for elucidation of evolutionary relationships, function and functionally important amino acid residues. We propose Geometric Invariant bas...
Sandeep Deshmukh, Aniket Dalal, Pramod Wangikar
BMCBI
2006
143views more  BMCBI 2006»
13 years 6 months ago
Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction
Background: One of the most powerful methods for the prediction of protein structure from sequence information alone is the iterative construction of profile-type models. Because ...
Eric D. Scheeff, Philip E. Bourne
BMCBI
2010
104views more  BMCBI 2010»
13 years 6 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton
EMNLP
2008
13 years 8 months ago
Improved Sentence Alignment on Parallel Web Pages Using a Stochastic Tree Alignment Model
Parallel web pages are important source of training data for statistical machine translation. In this paper, we present a new approach to sentence alignment on parallel web pages....
Lei Shi, Ming Zhou