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» A New Parallel Kernel-Independent Fast Multipole Method
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IJBRA
2008
116views more  IJBRA 2008»
13 years 6 months ago
High performance bio-image database retrieval using MPI
: Fast and accurate 3D object reconstruction and partial 3D component retrieval from 2D image slices represent a difficult and challenging problem. To group related objects on diff...
Yong Li, Xiujuan Chen, Saeid Belkasim, Yi Pan
BMCBI
2011
12 years 10 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
BMCBI
2010
139views more  BMCBI 2010»
13 years 6 months ago
A highly efficient multi-core algorithm for clustering extremely large datasets
Background: In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput t...
Johann M. Kraus, Hans A. Kestler
ICCD
2002
IEEE
128views Hardware» more  ICCD 2002»
14 years 3 months ago
Subword Sorting with Versatile Permutation Instructions
Subword parallelism has succeeded in accelerating many multimedia applications. Subword permutation instructions have been proposed to efficiently rearrange subwords in or among r...
Zhijie Shi, Ruby B. Lee
JCC
2008
125views more  JCC 2008»
13 years 6 months ago
Efficient electronic integrals and their generalized derivatives for object oriented implementations of electronic structure cal
: For the new parallel implementation of electronic structure methods in ACES III (Lotrich et al., in preparation) the present state-of-the-art algorithms for the evaluation of ele...
Norbert Flocke, Victor Lotrich