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» A New Similarity Measure among Protein Sequences
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ISCAS
2005
IEEE
129views Hardware» more  ISCAS 2005»
14 years 2 months ago
A reconfigurable architecture for scanning biosequence databases
—Unknown protein sequences are often compared to a set of known sequences (a database scan) to detect functional similarities. Even though efficient dynamic programming algorithm...
Timothy F. Oliver, Bertil Schmidt, Douglas L. Mask...
IPPS
2006
IEEE
14 years 3 months ago
Bio-sequence database scanning on a GPU
Protein sequences with unknown functionality are often compared to a set of known sequences to detect functional similarities. Efficient dynamic programming algorithms exist for t...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Sc...
BMCBI
2010
141views more  BMCBI 2010»
13 years 9 months ago
Computing and visually analyzing mutual information in molecular co-evolution
Background: Selective pressure in molecular evolution leads to uneven distributions of amino acids and nucleotides. In fact one observes correlations among such constituents due t...
Sebastian Bremm, Tobias Schreck, Patrick Boba, Ste...
BMCBI
2006
164views more  BMCBI 2006»
13 years 9 months ago
BIOZON: a system for unification, management and analysis of heterogeneous biological data
Integration of heterogeneous data types is a challenging problem, especially in biology, where the number of databases and data types increase rapidly. Amongst the problems that o...
Aaron Birkland, Golan Yona
WWW
2009
ACM
14 years 10 months ago
Smart Miner: a new framework for mining large scale web usage data
In this paper, we propose a novel framework called SmartMiner for web usage mining problem which uses link information for producing accurate user sessions and frequent navigation...
Murat Ali Bayir, Ismail Hakki Toroslu, Ahmet Cosar...