77 search results - page 7 / 16 » A Parallel, Out-of-Core Algorithm for RNA Secondary Structur... |
BIBE
2007
IEEE
14 years 1 months ago
2007
IEEE
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
WABI
2005
Springer
14 years 26 days ago
2005
Springer
Abstract Baharak Rastegari and Anne Condon Department of Computer Science, University of British Columbia Abstract. Accurate prediction of pseudoknotted RNA secondary structure is ...
BMCBI
2004
13 years 7 months ago
2004
Background: An increasing number of researchers have released novel RNA structure analysis and prediction algorithms for comparative approaches to structure prediction. Yet, indep...
JCB
2007
13 years 7 months ago
2007
Accurate prediction of pseudoknotted nucleic acid secondary structure is an important computational challenge. Prediction algorithms based on dynamic programming aim to find a st...
AAIM
2007
Springer
2007
Springer
Improved Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
14 years 1 months ago
We study three closely related problems motivated by the prediction of RNA secondary structures with arbitrary pseudoknots: the MAXIMUM BASE PAIR STACKINGS problem proposed by Ieon...