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SAC
2009
ACM
14 years 2 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
IEEEAMS
2003
IEEE
14 years 22 days ago
Communication Pattern Based Node Selection for Shared Networks
Selection of the most suitable nodes on a network to execute a parallel application requires matching the network status to the application requirements. We propose and validate a...
Srikanth Goteti, Jaspal Subhlok
VEE
2006
ACM
139views Virtualization» more  VEE 2006»
14 years 1 months ago
Vector LLVA: a virtual vector instruction set for media processing
We present Vector LLVA, a virtual instruction set architecture (VISA) that exposes extensive static information about vector parallelism while avoiding the use of hardware-speciļ¬...
Robert L. Bocchino Jr., Vikram S. Adve
FPGA
2004
ACM
119views FPGA» more  FPGA 2004»
14 years 25 days ago
A quantitative analysis of the speedup factors of FPGAs over processors
The speedup over a microprocessor that can be achieved by implementing some programs on an FPGA has been extensively reported. This paper presents an analysis, both quantitative a...
Zhi Guo, Walid A. Najjar, Frank Vahid, Kees A. Vis...
IPPS
2003
IEEE
14 years 22 days ago
Extending OpenMP to Support Slipstream Execution Mode
OpenMP has emerged as a widely accepted standard for writing shared memory programs. Hardware-speciļ¬c extensions such as data placement are usually needed to improve the scalabi...
Khaled Z. Ibrahim, Gregory T. Byrd