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» A Parallel Version for the Propagation Algorithm
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BMCBI
2011
13 years 2 months ago
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
IPPS
2000
IEEE
14 years 1 days ago
Implementation of Finite Lattices in VLSI for Fault-State Encoding in High-Speed Networks
In this paper the propagation of information about fault states and its implementation in high-speed networks is discussed. The algebraic concept of a lattice partial ordered set ...
Andreas C. Döring, Gunther Lustig
ICS
1994
Tsinghua U.
13 years 11 months ago
Evaluating automatic parallelization for efficient execution on shared-memory multiprocessors
We present a parallel code generation algorithm for complete applications and a new experimental methodology that tests the efficacy of our approach. The algorithm optimizes for d...
Kathryn S. McKinley
IPPS
2002
IEEE
14 years 17 days ago
Parallel Genehunter: Implementation of a Linkage Analysis Package for Distributed-Memory Architectures
We present a parallel algorithm for performing multipoint linkage analysis of genetic marker data on large family pedigrees. The algorithm effectively distributes both the computa...
Gavin C. Conant, Steve Plimpton, William Old, Andr...
ICALP
1994
Springer
13 years 11 months ago
Simple Fast Parallel Hashing
A hash table is a representation of a set in a linear size data structure that supports constanttime membership queries. We show how to construct a hash table for any given set of...
Joseph Gil, Yossi Matias