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» A Parallel Version for the Propagation Algorithm
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WOB
2004
120views Bioinformatics» more  WOB 2004»
13 years 10 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
BMCBI
2008
151views more  BMCBI 2008»
13 years 8 months ago
Application of the Linux cluster for exhaustive window haplotype analysis using the FBAT and Unphased programs
Background: Genetic association studies have been used to map disease-causing genes. A newly introduced statistical method, called exhaustive haplotype association study, analyzes...
Hiroyuki Mishima, Andrew C. Lidral, Jun Ni
CGF
2010
147views more  CGF 2010»
13 years 8 months ago
Resampling Strategies for Deforming MLS Surfaces
Moving-Least-Squares (MLS) Surfaces undergoing large deformations need periodic regeneration of the point set (point-set resampling) so as to keep the point-set density quasi-unif...
Joao Paulo Gois, Gustavo C. Buscaglia
EMNLP
2009
13 years 6 months ago
The infinite HMM for unsupervised PoS tagging
We extend previous work on fully unsupervised part-of-speech tagging. Using a non-parametric version of the HMM, called the infinite HMM (iHMM), we address the problem of choosing...
Jurgen Van Gael, Andreas Vlachos, Zoubin Ghahraman...
ICS
2009
Tsinghua U.
14 years 1 months ago
Exploring pattern-aware routing in generalized fat tree networks
New static source routing algorithms for High Performance Computing (HPC) are presented in this work. The target parallel architectures are based on the commonly used fattree netw...
Germán Rodríguez, Ramón Beivi...