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136
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BMCBI
2005
125views more  BMCBI 2005»
15 years 3 months ago
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Background: We present a complete re-implementation of the segment-based approach to multiple protein alignment that contains a number of improvements compared to the previous ver...
Amarendran R. Subramanian, Jan Weyer-Menkhoff, Mic...
151
Voted
JSA
2007
191views more  JSA 2007»
15 years 3 months ago
Automated memory-aware application distribution for Multi-processor System-on-Chips
Mapping of applications on a Multiprocessor System-on-Chip (MP-SoC) is a crucial step to optimize performance, energy and memory constraints at the same time. The problem is formu...
Heikki Orsila, Tero Kangas, Erno Salminen, Timo D....
135
Voted
DAC
2005
ACM
16 years 4 months ago
Robust gate sizing by geometric programming
We present an efficient optimization scheme for gate sizing in the presence of process variations. Using a posynomial delay model, the delay constraints are modified to incorporat...
Jaskirat Singh, Vidyasagar Nookala, Zhi-Quan Luo, ...
KDD
2009
ACM
611views Data Mining» more  KDD 2009»
16 years 4 months ago
Fast approximate spectral clustering
Spectral clustering refers to a flexible class of clustering procedures that can produce high-quality clusterings on small data sets but which has limited applicability to large-s...
Donghui Yan, Ling Huang, Michael I. Jordan
123
Voted
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
15 years 10 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang